For presence frequency I mean higher frequency, but I play guitar and I don't play around bass pedal too much, so I don't what works fine and what works bad.
When you increase C5 you will cut less bass. Using a 100nF the difference in the low end should be substantial, at least around the 100Hz, while the treble remains down. After you changed C5 if you hear the treble too much rolled off, decreasing C4 you'll push a bit of treble, but keeping the original mid scoop of the circuit.
I didn't try this circuit, so you need some experiments to find the right value and see if the pedal will sound ok to your hear.