Embrace the glitch, choose a different octave-fuzz when the Mantle's inherent nature is not required.
RG Keen suggests the Anderton Rocktave as a more suitable candidate for octave-down:
mxr blue box: theory or operation?
www.diystompboxes.com
RG KEEN: "
I've listened to both a Blue Box and a Rocktave, and the Rocktave front end does a much better job of producing a waveform that can be tracked and used by digital stuff later. It's output also has much fewer sputters, crackles and mis-starts."
Not to dissuade you from your endeavour, I am merely here to try to learn more about what makes this circuit tick — I really like my Blue Box clone.
Keen has a pretty good explanation in the DIYSB thread above of what's doing what (you'll have to translate R15/C8/Q2 etc from the GGG schematic to the Mantle's).
Here's a few things I've come across about the circuit:
Mark Hammer, in the same thread above (IIRC, I didn't mark it, but it's in my notes right below RG Keen's description of how the circuit works):
MARK HAMMER "
IC1b serves two purposes. The principal purpose is to output a square wave that reliably exceeds the minimum needed to trigger the flip-flop into division, for much of the note's lifespan. But...while we're in the neigbourhood, that same high-amplitude square wave is used to provide a source of a "fuzz" signal to be blended with the sub-octave."
JohnK is a well-known DIYer in the Talk Bass community and is on many of the DIY sites as well, he had this to say about it:
http://tagboardeffects.blogspot.com/2013/04/mxr-blue-box.html JOHNK “
when I added the 1 octave switch, it was really glitchy until I lowered the voltage going to it with my benchtop power supply. adding a 470 ohm resistor to the 9v supply fixed that. it also was a bit too distorted for me so I changed the 1K resistor to s 4.99K [sic] one in the the gain stage. I also omitted the 10n cap across lugs 2 & 3 on the volume control because I found the pedal to be too bright (AKA, Keeley C11 mod).”
If I recall, that 10n cap was changed to 6n8 in one of his other posts or layouts — omitted or 6n8? Whatever. Adjust to taste… but dropping the voltage may have other consequences:
https://www.diystompboxes.com/smfforum/index.php?topic=79181.0
DDPAWEL: "Tonepad layout try to make R5 =1k [R5] into 470ohm res. + 10k pot. Another way is to change R8=1M [R4 U1 FEEDBACK RESISTOR] into 100k res. + 1M pot. Or combine both of them. Be careful, I don't know how much low the values of R8 [R4] and R5 [R5] can be. MXR Blue Box have something called a Schmitt trigger around ic1b which needs a good gain."
Bold em
phasis above is mine.
I hope something from the above aids you in some way.