UPDATE SOLVED. I installed the incorrect resistor in position R39. This took me a while to find the time to fix, but I finally got around to it this time..
My next move was to go through and check every component. I checked every capatior, and they were all correct. Next I moved onto the resistors, by value. 100k was all correct, and then I got to 100r and discovered this maroon 100k resistor I installed by mistake! Only 1000 times what it was supposed to be...
What I think happened is I was out of stock of 100r, checked my partner's parts bin and found this in a drawer labeled 100r. I had been checking values 4 times before I commited to solder for the rest of the build but it is possible I slipped up in a rush to hear it....Many, many componenets in this build.
Once the offending resistor was replaced, the dullness went away, it now has a beautiful glassy top end like it should. The Level tim pot, which I previously had cranked all the way, had to be turned down quite a bit as it was now giving it a huge boost.
I am still having a bit of difficulty tuning the gain 2 trim pot, but I think I am at a happy medium between the modes at the moment. I might replace it with a multi-turn trimmer in the future, and am going to continue to double check my components to make sure I did not make any other mistakes.
Thank you all for the help and for the ideas. Anyone building one of these, don't be too discouraged if you have issues. Just slow down, take your time and check everything at least 4 times before soldering! I have built dozens of pedals, and many BBD circuits before this one and still had a few boofs along the way.