The 100 ohm resistor is there to help quiet down any power supply ripples along with the 47uf cap. You could remove it and probably not notice a difference. Or you could bump it up to 220 ohm or 470 ohm and get a little less voltage to the circuit so you have more of that low battery type of sound people dig with fuzz faces.
As far as the miller caps go, this started off as a Colorsound fuzz on the breadboard, which used a 220pf miller cap on q1 according to one schematic and no miller cap on q2. That may have been the reissue version or something. There's a bunch of one knob fuzzes that use the same topology with tweaked values. I've built a clone of the DAM Meathead and it had a 470pf miller cap on q1 along with a 47pf cap on q2. I thought it had a bit of a mid notched sound at times so I played around with the miller cap values to get something that smoothed out the silicon transistors inherent qualities without taking away too much sparkle. I couldn't tell you what equation to use to determine what it's frequency response is. I just went by ear.
The 100pf to ground on the input just cuts out radio signals. My house has old wiring and I live down the street from a radio station so when I breadboard fuzzes, specifically these fuzz face or tonebender mk1.5 type circuits, I always pick up radio signals. The cap helps cut them out so I can turn my guitar volume down without hearing country music lol.
If you have a circuit that has a big volume output, using a logarithmic pot for the output volume works well because the taper shifts the loudest portion further clockwise on the knob. In a lower output circuit you can use a linear pot which has more volume earlier in the sweep. That will make it seem like the circuit is louder than it is because noon on the volume pot will be louder, you just won't have a tone of volume boost further clockwise like you would with a logarithmic pot. With the bias pot on here you lose a little volume once you get into that spitty velcro fuzz portion of the pot so I wanted to use a linear pot to make it seem a little louder. On the other hand turning the bias pot the other way makes it pretty damn loud.
I went with 100k for the volume pot because it's a common part really and I'm also using 100k for the input cap blend, so it's less unique parts to stock. I changed the output cap to to a larger one than the old fuzzes have so it would have a full bass output all the way through the volume pretty much. The output cap forms a high pass filter with the volume pot so a smaller cap will cut some bass out at lower volume output. You can use a filter calculator to determine the frequency response (
http://www.muzique.com/schem/filter.htm), but I'm not totally sure how much the resistance in the front of the pot when using it as a voltage divider effects the response.