Initially most projects won't change from the current IN/GND/SW/OUT configuration.
Over time some will incorporate the "Intelligent Bypass" functionality on-board.
This thread is more focusing on a buffered bypass / digital pass-through type of configuration, just because it accommodates a select few "specialized" effects better than any other method. These will typically be momentary effects where you just need to hit the footswitch for a quick spot effect. (manual through-zero flange, dive bomb, sustainer, etc etc)...
Nothing is set in stone yet though, there are other ways to achieve the same goal but ideally I'd like them to be instantly activated rather than a tap dance between two footswitches.
The swiss army flanger will be true-bypass.