I want to change led's position

The simplest way is probably to just move the hole there yourself (you can just figure out some numbers where it looks nice, maybe make the vertical position same as the footswitch so it looks neat) and run wires from the LED hole. The other option is to jumper the LED holes and run a wire from the PCB's SW to the LED and then to the footswitch.
 
Aion LEDs are beside the switch. You could estimate the dimensions from a drill template on their site and compare to the PedalPCB templates. Adjust for actual switch position (X should fine, adjust the Y if needed). IIRC, Aion assumes you are using a 5mm with bezel, also adjust hole size as needed.
 
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