I think I would recommend the following if you wanted a good mix of vintage/modern performance:
Q15 = BC547B
Q5, Q6, Q8-Q12 = BC547A
Q14 = BC547C
Q1/Q2, Q3/Q4 = MPSA13
As far as how to install the MPSA13 in place of two transistors, notice how the pairs in question are actually already wired as true darlingtons, as opposed to the pairs in the phaser stages, where on collector has a resistor:
LFO/Bulb Driver:
View attachment 118178
Phase Stages:
View attachment 118179
The easiest way to make the true darlington install would be to make the install of the single darlington into Q2 and Q3, and simply install a jumper wire from base to emitter on Q1 and Q4:
View attachment 118180
Since 2n5088 and MPSA13 both have the same orientation, it should work out like this, and this is how I did it in the past:
View attachment 118181