I’m a big fan of testing before boxing. I definitely recommend building a test box (there’s a thread over in toolbox d) for Currently we don’t know if it’s an offboard wiring issue (although quick glance it looks ok) or on the circuit board.
Check that power jack though, is it metal? Usually don’t want a metal dc jack with guitar pedals since the sleeve is positive and could short against the box. I can’t tell if it’s insulated from connecting to the box.
If you disconnect the power, do you still get dry sound when the pedal is supposed to be on? That would indicate offboard wiring error or faulty footswitch.
If it makes no sound when on with the power removed, then probably your offboard is ok and the sound you’re hearing is the signal passing through the pedals, but without delay. Then it’d be something either around the input or output of the pt2399 is bad, use an audio probe to pinpoint the problem. Also use a multimeter to check voltages on the chips (tagboard effects page for this one has loads of troubleshooting comments with the voltages listed).
Also, you can give a shot at popping another pt2399 in there, once you’ve confirmed your offboard wiring is ok.